Transcript: lnc-ARL14EP-3:7

Basic information

LNCipedia transcript ID: lnc-ARL14EP-3:7 
LNCipedia gene ID: lnc-ARL14EP-3
Location (hg38): chr11:30741556-30793130
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 873 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019270; NONHSAT018600
Alternative gene names: XLOC_009100; linc-DNAJC24-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.383 non-coding 
CPAT coding probability 2.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARL14EP-3:7 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C11orf46-1:1
3.1 lnc-C11orf46-3:1
4.0 lnc-C11orf46-3:1
4.1 lnc-C11orf46-3:1
5.0 lnc-C11orf46-3:1
5.1 lnc-QSER1-22:7
5.2 lnc-ARL14EP-3:7