Transcript: lnc-ARHGEF5-2:4

Basic information

LNCipedia transcript ID: lnc-ARHGEF5-2:4 
LNCipedia gene ID: lnc-ARHGEF5-2
Location (hg38): chr7:145157013-145160144
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 256 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013620; NONHSAT123940
Alternative gene names: XLOC_006283; linc-CNTNAP2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -296.8713 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGEF5-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGEF5-2:4
3.1 lnc-ARHGEF5-2:4
4.0 lnc-ARHGEF5-2:4
4.1 lnc-ARHGEF5-2:4
5.0 lnc-ARHGEF5-2:4
5.1 lnc-ADCK2-62:5
5.2 lnc-ARHGEF5-2:4