Transcript: lnc-ARHGEF2-1:1

Basic information

LNCipedia transcript ID: lnc-ARHGEF2-1:1 
LNCipedia gene ID: lnc-ARHGEF2-1
Location (hg38): chr1:155996323-156002564
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 429 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000643; ENST00000454974.1; RP11-336K24.6-001; OTTHUMT00000046192.1; NONHSAT006792
Alternative gene names: XLOC_001043; linc-ARHGEF2; ENSG00000227010.1; RP11-336K24.6; OTTHUMG00000017460.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -269.4929 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGEF2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGEF2-1:1
3.1 lnc-ARHGEF2-1:1
4.0 lnc-ARHGEF2-1:1
4.1 lnc-ARHGEF2-1:1
5.0 lnc-ARHGEF2-1:1
5.1 lnc-KHDC4-4:3
5.2 lnc-ARHGEF2-1:1