Transcript: lnc-ARHGAP15-1:1

Basic information

LNCipedia transcript ID: lnc-ARHGAP15-1:1 
LNCipedia gene ID: lnc-ARHGAP15-1
Ensembl Gene ID: ENSG00000236356
Ensembl Transcript ID: ENST00000426716
Location (hg38): chr2:143799467-143819599
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 464 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003014; ENST00000426716; ENST00000426716.1; AC079584.2-001; OTTHUMT00000332234.1; NONHSAT074748
Alternative gene names: XLOC_001693; linc-ACVR2A-7; ENSG00000236356; AC079584.2; ENSG00000236356.1; OTTHUMG00000153725.1; AC079584.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -279.3743 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP15-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGAP15-1:1
3.1 lnc-ARHGAP15-1:1
4.0 lnc-ARHGAP15-1:1
4.1 lnc-ARHGAP15-1:1
5.0 lnc-ARHGAP15-1:1
5.1 lnc-KCNJ3-78:1
5.2 lnc-ARHGAP15-1:1