Transcript: lnc-ARFGEF2-2:12

Basic information

LNCipedia transcript ID: lnc-ARFGEF2-2:12 
LNCipedia gene ID: lnc-ARFGEF2-2
Ensembl Gene ID: ENSG00000281365
Ensembl Transcript ID: ENST00000630976
Location (hg38): chr20:48471308-48472414
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 642 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000630976.1
Alternative gene names: ENSG00000281365.1; RP5-991B18.1; AL049541.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARFGEF2-2:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ARFGEF2-2:12
4.1 lnc-ARFGEF2-2:12
5.0 lnc-ARFGEF2-2:12
5.1 lnc-SNAI1-43:1
5.2 lnc-ARFGEF2-2:12