Transcript: lnc-ARF5-4:1

Basic information

LNCipedia transcript ID: lnc-ARF5-4:1 
LNCipedia gene ID: lnc-ARF5-4
Ensembl Gene ID: ENSG00000241921
Ensembl Transcript ID: ENST00000488818
Location (hg38): chr7:126378970-126424185
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 646 bp
Exons: 7
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013075; ENST00000488818.1; AC000370.2-001; OTTHUMT00000349526.2; NONHSAT123117
Alternative gene names: XLOC_006236; linc-ARF5-3; ENSG00000241921.1; AC000370.2; OTTHUMG00000157729.2; AC000372.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.0804 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARF5-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARF5-3:1
3.1 lnc-ARF5-4:1
4.0 lnc-ARF5-4:1
4.1 lnc-ARF5-4:1
5.0 lnc-ARF5-4:1
5.1 lnc-SPAM1-20:1
5.2 lnc-ARF5-4:1