Transcript: lnc-ARAP2-6:1

Basic information

LNCipedia transcript ID: lnc-ARAP2-6:1 
LNCipedia gene ID: lnc-ARAP2-6
Ensembl Gene ID: ENSG00000250954
Ensembl Transcript ID: ENST00000505018
RefSeq ID: NR_125902
Location (hg38): chr4:33896339-34039893
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2404 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000505018; ENST00000505018.1; RP11-79E3.3-001; OTTHUMT00000360340.2; NONHSAT095971; NR_125902; NR_125902.1
Alternative gene names: ENSG00000250954; RP11-79E3.3; ENSG00000250954.1; OTTHUMG00000160354.3; ENSG00000250954.5; AC016687.3; LOC101928622


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6376 non-coding 
CPAT coding probability 16.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARAP2-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARAP2-4:1
3.1 lnc-ARAP2-6:1
4.0 lnc-ARAP2-6:1
4.1 lnc-ARAP2-6:1
5.0 lnc-ARAP2-6:1
5.1 lnc-GABRA4-76:1
5.2 lnc-ARAP2-6:1