Transcript: lnc-APOF-1:3

Basic information

LNCipedia transcript ID: lnc-APOF-1:3 
LNCipedia gene ID: lnc-APOF-1
Location (hg38): chr12:56349860-56351181
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 717 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT028821
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.8031 non-coding 
CPAT coding probability 16.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOF-1:3 yes no no no

Available literature

  1. Ma (2015), Co‑expression of the carbamoyl‑phosphate synthase 1 gene and its long non‑coding RNA correlates with poor prognosis of patients with intrahepatic cholangiocarcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-APOF-1:3
4.0 lnc-APOF-1:3
4.1 lnc-APOF-1:3
5.0 lnc-APOF-1:3
5.1 lnc-PMEL-33:3
5.2 lnc-APOF-1:3