Transcript: lnc-APLN-1:1

Basic information

LNCipedia transcript ID: lnc-APLN-1:1 
LNCipedia gene ID: lnc-APLN-1
Location (hg38): chrX:129675987-129678381
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 285 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00017369
Alternative gene names: XLOC_008233; linc-APLN-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.0311 non-coding 
CPAT coding probability 6.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APLN-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APLN-1:1
3.1 lnc-APLN-1:1
4.0 lnc-APLN-1:1
4.1 lnc-APLN-1:1
5.0 lnc-APLN-1:1
5.1 lnc-HS6ST2-24:3
5.2 lnc-APLN-1:1