Transcript: lnc-API5-4:6

Basic information

LNCipedia transcript ID: lnc-API5-4:6 
LNCipedia gene ID: lnc-API5-4
Ensembl Gene ID: ENSG00000255279
Ensembl Transcript ID: ENST00000530946
Location (hg38): chr11:41859843-41862330
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 533 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530946; ENST00000530946.1; RP11-375D13.4-003; OTTHUMT00000389469.1; NONHSAT018901
Alternative gene names: ENSG00000255279; RP11-375D13.4; ENSG00000255279.1; OTTHUMG00000166378.1; AC023442.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.6132 non-coding 
CPAT coding probability 1.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-API5-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-API5-3:6
3.1 lnc-API5-4:6
4.0 lnc-API5-4:6
4.1 lnc-API5-4:6
5.0 lnc-API5-4:6
5.1 lnc-CAPRIN1-55:7
5.2 lnc-API5-4:6