Transcript: lnc-API5-3:1

Basic information

LNCipedia transcript ID: lnc-API5-3:1 
LNCipedia gene ID: lnc-API5-3
Ensembl Gene ID: ENSG00000254822
Ensembl Transcript ID: ENST00000526455
Location (hg38): chr11:41876634-41877078
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 270 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526455; ENST00000526455.1; RP11-375D13.3-001; OTTHUMT00000389470.1; NONHSAT018902
Alternative gene names: ENSG00000254822; RP11-375D13.3; ENSG00000254822.1; OTTHUMG00000166379.1; AC023442.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -404.3273 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-API5-3:1 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-API5-2:1
3.1 lnc-API5-3:1
4.0 lnc-API5-3:1
4.1 lnc-API5-3:1
5.0 lnc-API5-3:1
5.1 lnc-CAPRIN1-56:1
5.2 lnc-API5-3:1