Transcript: lnc-APELA-1:3

Basic information

LNCipedia transcript ID: lnc-APELA-1:3 
LNCipedia gene ID: lnc-APELA-1
Location (hg38): chr4:164896464-164898965
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 762 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000515405; ENST00000515405.1; RP11-366M4.3-005; OTTHUMT00000364317.1; NONHSAT099086
Alternative gene names: ENSG00000248329; RP11-366M4.3; ENSG00000248329.1; OTTHUMG00000161255.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.1183 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APELA-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C4orf39-1:5
3.1 lnc-C4orf39-1:5
4.0 lnc-C4orf39-1:5
4.1 lnc-C4orf39-1:5
5.0 lnc-C4orf39-1:5
5.1 lnc-CLCN3-37:14
5.2 lnc-APELA-1:3