Transcript: lnc-APC-2:1

Basic information

LNCipedia transcript ID: lnc-APC-2:1 
LNCipedia gene ID: lnc-APC-2
Location (hg38): chr5:112521503-112532589
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2799 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000541361; NONHSAT103230
Alternative gene names: ENSG00000257082; AC137549.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 53.5132 non-coding 
CPAT coding probability 57.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-APC-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APC-2:1
3.1 lnc-APC-2:1
4.0 lnc-APC-2:1
4.1 lnc-APC-2:1
5.0 lnc-APC-2:1
5.1 lnc-AP3S1-54:1
5.2 lnc-APC-2:1