Transcript: lnc-APBB3-3:2

Basic information

LNCipedia transcript ID: lnc-APBB3-3:2 
LNCipedia gene ID: lnc-APBB3-3
Ensembl Gene ID: ENSG00000283155
Ensembl Transcript ID: ENST00000513766
Location (hg38): chr5:140563890-140574197
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 558 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT104202; ENST00000513766.2
Alternative gene names: ENSG00000283155.1; AC011380.9; AC116353.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.8162 non-coding 
CPAT coding probability 4.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APBB3-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRA1-3:2
4.0 lnc-SRA1-3:2
4.1 lnc-SRA1-3:2
5.0 lnc-SRA1-3:2
5.1 lnc-DND1-8:2
5.2 lnc-APBB3-3:2