Transcript: lnc-APBB1IP-2:1

Basic information

LNCipedia transcript ID: lnc-APBB1IP-2:1 
LNCipedia gene ID: lnc-APBB1IP-2
Ensembl Gene ID: ENSG00000235843
Ensembl Transcript ID: ENST00000458171
Location (hg38): chr10:26717635-26718778
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 485 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458171.1; RP13-16H11.5-001; OTTHUMT00000047280.1; NONHSAT011860
Alternative gene names: ENSG00000235843.1; RP13-16H11.5; OTTHUMG00000017845.1; AL390961.3; AL390961.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.9758 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APBB1IP-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-APBB1IP-2:1
4.0 lnc-APBB1IP-2:1
4.1 lnc-APBB1IP-2:1
5.0 lnc-APBB1IP-2:1
5.1 lnc-NPY4R2-250:1
5.2 lnc-APBB1IP-2:1