Transcript: lnc-AP3S1-4:2

Basic information

LNCipedia transcript ID: lnc-AP3S1-4:2 
LNCipedia gene ID: lnc-AP3S1-4
Ensembl Gene ID: ENSG00000249249
Ensembl Transcript ID: ENST00000508517
Location (hg38): chr5:115602244-115620278
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 539 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508517.1; AC010226.4-002; OTTHUMT00000371006.1
Alternative gene names: ENSG00000249249.1; AC010226.4; OTTHUMG00000155201.2; AC010226.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -310.9099 non-coding 
CPAT coding probability 8.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP3S1-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP3S1-4:2
4.0 lnc-AP3S1-4:2
4.1 lnc-AP3S1-4:2
5.0 lnc-AP3S1-4:2
5.1 lnc-AP3S1-4:2
5.2 lnc-AP3S1-4:2