Transcript: lnc-AP1S2-2:2

Basic information

LNCipedia transcript ID: lnc-AP1S2-2:2 
LNCipedia gene ID: lnc-AP1S2-2
Location (hg38): chrX:16153220-16165121
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000454712.1; RP11-431J24.2-003; OTTHUMT00000140821.1; NONHSAT136372
Alternative gene names: ENSG00000238178.1; RP11-431J24.2; OTTHUMG00000021187.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.4916 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP1S2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP1S2-2:2
4.0 lnc-AP1S2-2:2
4.1 lnc-AP1S2-2:2
5.0 lnc-AP1S2-2:2
5.1 lnc-PCSK1N-179:4
5.2 lnc-AP1S2-2:2