Transcript: lnc-ANXA2R-1:8

Basic information

LNCipedia transcript ID: lnc-ANXA2R-1:8 
LNCipedia gene ID: lnc-ANXA2R-1
Ensembl Gene ID: ENSG00000177738
Ensembl Transcript ID: ENST00000503152
Location (hg38): chr5:43014736-43067419
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 608 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503152; ENST00000503152.1; CTD-2201E18.3-003; OTTHUMT00000368049.1; NONHSAT101256
Alternative gene names: ENSG00000177738; CTD-2201E18.3; ENSG00000177738.3; OTTHUMG00000162133.2; AC025171.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.4512 non-coding 
CPAT coding probability 1.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANXA2R-1:8 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf39-1:4
3.1 lnc-C5orf39-1:4
4.0 lnc-C5orf39-1:4
4.1 lnc-C5orf39-1:4
5.0 lnc-C5orf39-1:4
5.1 lnc-SELENOP-8:8
5.2 lnc-ANXA2R-1:8