Transcript: lnc-ANXA2R-1:22

Basic information

LNCipedia transcript ID: lnc-ANXA2R-1:22 
LNCipedia gene ID: lnc-ANXA2R-1
Ensembl Gene ID: ENSG00000177738
Ensembl Transcript ID: ENST00000314957
Location (hg38): chr5:43014414-43018724
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2388 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000314957; ENST00000314957.3; CTD-2201E18.3-001; OTTHUMT00000367471.1; NONHSAT101254
Alternative gene names: ENSG00000177738; CTD-2201E18.3; ENSG00000177738.3; OTTHUMG00000162133.2; AC025171.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.595 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANXA2R-1:22 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf39-1:9
3.1 lnc-C5orf39-1:9
4.0 lnc-C5orf39-1:9
4.1 lnc-C5orf39-1:9
5.0 lnc-C5orf39-1:9
5.1 lnc-SELENOP-8:22
5.2 lnc-ANXA2R-1:22