Transcript: lnc-ANXA2R-1:18

Basic information

LNCipedia transcript ID: lnc-ANXA2R-1:18 
LNCipedia gene ID: lnc-ANXA2R-1
RefSeq ID: NR_034086
Location (hg38): chr5:43014729-43018811
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2160 bp
Exons: 2
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009223; NR_034086; NR_034086.1
Alternative gene names: XLOC_004804; linc-SEPP1-1; LOC648987


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.595 non-coding 
CPAT coding probability 2.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANXA2R-1:18 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf39-1:8
3.1 lnc-C5orf39-1:6
4.0 lnc-C5orf39-1:6
4.1 lnc-C5orf39-1:6
5.0 lnc-C5orf39-1:6
5.1 lnc-SELENOP-8:18
5.2 lnc-ANXA2R-1:18