Transcript: lnc-ANXA2R-1:17

Basic information

LNCipedia transcript ID: lnc-ANXA2R-1:17 
LNCipedia gene ID: lnc-ANXA2R-1
Location (hg38): chr5:43014421-43018811
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2584 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009278; NONHSAT101255
Alternative gene names: XLOC_004804; linc-SEPP1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.2322 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANXA2R-1:17 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf39-1:7
3.1 lnc-C5orf39-1:8
4.0 lnc-C5orf39-1:8
4.1 lnc-C5orf39-1:8
5.0 lnc-C5orf39-1:8
5.1 lnc-SELENOP-8:17
5.2 lnc-ANXA2R-1:17