Transcript: lnc-ANKRD42-3:1

Basic information

LNCipedia transcript ID: lnc-ANKRD42-3:1 
LNCipedia gene ID: lnc-ANKRD42-3
Ensembl Gene ID: ENSG00000255311
Ensembl Transcript ID: ENST00000531424
Location (hg38): chr11:83643602-83648043
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 545 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531424.1; RP11-160H12.2-004; OTTHUMT00000393453.1; NONHSAT023418; ENST00000531424.5
Alternative gene names: ENSG00000255311.1; RP11-160H12.2; OTTHUMG00000167144.1; ENSG00000255311.5; AP002370.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -260.6772 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD42-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD42-3:1
4.0 lnc-ANKRD42-3:1
4.1 lnc-ANKRD42-3:1
5.0 lnc-ANKRD42-3:1
5.1 lnc-DDIAS-13:1
5.2 lnc-ANKRD42-3:1