Transcript: lnc-ANKRD30A-4:1

Basic information

LNCipedia transcript ID: lnc-ANKRD30A-4:1 
LNCipedia gene ID: lnc-ANKRD30A-4
Ensembl Gene ID: ENSG00000238176
Ensembl Transcript ID: ENST00000457804
Location (hg38): chr10:36940109-36943932
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 293 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017813; ENST00000457804; ENST00000457804.1; RP11-322I2.1-001; OTTHUMT00000047585.1; NONHSAT012757
Alternative gene names: XLOC_008452; linc-ANKRD30A-1; ENSG00000238176; RP11-322I2.1; ENSG00000238176.1; OTTHUMG00000017965.1; AL390061.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.7958 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD30A-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD30A-3:1
3.1 lnc-ANKRD30A-4:1
4.0 lnc-ANKRD30A-4:1
4.1 lnc-ANKRD30A-4:1
5.0 lnc-ANKRD30A-4:1
5.1 lnc-NPY4R2-140:1
5.2 lnc-ANKRD30A-4:1