Transcript: lnc-ANKRD20A2-2:1

Basic information

LNCipedia transcript ID: lnc-ANKRD20A2-2:1 
LNCipedia gene ID: lnc-ANKRD20A2-2
Ensembl Gene ID: ENSG00000228136
Ensembl Transcript ID: ENST00000425632
Location (hg38): chr9:40130921-40153147
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 347 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425632.1; RP11-216M21.5-001; OTTHUMT00000143025.1; NONHSAT131286
Alternative gene names: ENSG00000228136.1; RP11-216M21.5; OTTHUMG00000066714.1; AL773545.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.127 non-coding 
CPAT coding probability 45.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ANKRD20A2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD20A2-2:1
4.0 lnc-ANKRD20A2-2:1
4.1 lnc-ANKRD20A2-2:1
5.0 lnc-ANKRD20A2-2:1
5.1 lnc-DCAF10-33:2
5.2 lnc-ANKRD20A2-2:1