Transcript: lnc-ANGPTL8-1:1

Basic information

LNCipedia transcript ID: lnc-ANGPTL8-1:1 
LNCipedia gene ID: lnc-ANGPTL8-1
Ensembl Gene ID: ENSG00000267082
Ensembl Transcript ID: ENST00000588634
RefSeq ID: NR_134909
Location (hg38): chr19:11203628-11216168
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 569 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT061122; ENST00000588634.1; NR_134909.1
Alternative gene names: ENSG00000267082.1; CTC-510F12.2; AC011472.1; LOC105372273


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.3926 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANGPTL8-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C19orf80-1:1
4.0 lnc-C19orf80-1:1
4.1 lnc-C19orf80-1:1
5.0 lnc-C19orf80-1:1
5.1 lnc-PLPPR2-13:1
5.2 lnc-ANGPTL8-1:1