Transcript: lnc-ANGPTL2-2:3

Basic information

LNCipedia transcript ID: lnc-ANGPTL2-2:3 
LNCipedia gene ID: lnc-ANGPTL2-2
Ensembl Gene ID: ENSG00000224842
Ensembl Transcript ID: ENST00000425370
Location (hg38): chr9:126608278-126613699
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 506 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015884; ENST00000425370.1; RP11-123K19.1-001; OTTHUMT00000054118.1; NONHSAT134777
Alternative gene names: XLOC_007855; linc-MAPKAP1-3; ENSG00000224842.2; RP11-123K19.1; OTTHUMG00000020690.2; AL161908.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.5657 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANGPTL2-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANGPTL2-1:2
3.1 lnc-ANGPTL2-2:3
4.0 lnc-ANGPTL2-2:3
4.1 lnc-ANGPTL2-2:3
5.0 lnc-ANGPTL2-2:3
5.1 lnc-SPOUT1-85:8
5.2 lnc-ANGPTL2-2:3