Transcript: lnc-AMELY-19:2

Basic information

LNCipedia transcript ID: lnc-AMELY-19:2 
LNCipedia gene ID: lnc-AMELY-19
RefSeq ID: NR_003593
Location (hg38): chrY:6242446-6243610
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 512 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000451467.1; TTTY23B-001; OTTHUMT00000087748.1; NONHSAT139332; NR_001540; NR_003593; NR_003593.1
Alternative gene names: ENSG00000237069.2; TTTY23B; OTTHUMG00000036006.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.9934 non-coding 
CPAT coding probability 3.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMELY-19:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AMELY-6:1
4.0 TTTY23B:2
4.1 TTTY23B:2
5.0 TTTY23B:2
5.1 lnc-DAZ1-145:2
5.2 lnc-AMELY-19:2