Transcript: lnc-ALKAL2-2:32

Basic information

LNCipedia transcript ID: lnc-ALKAL2-2:32 
LNCipedia gene ID: lnc-ALKAL2-2
Ensembl Gene ID: ENSG00000235779
Ensembl Transcript ID: ENST00000457938
Location (hg38): chr2:305841-307157
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 445 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003141; ENST00000457938; ENST00000457938.1; AC079779.5-002; OTTHUMT00000322389.1; NONHSAT068518; ENST00000457938.5
Alternative gene names: XLOC_001927; linc-FAM150B-4; ENSG00000235779; AC079779.5; ENSG00000235779.1; OTTHUMG00000151363.1; ENSG00000235779.3; ENSG00000235779.7; AC079779.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.3549 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALKAL2-2:32 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM150B-2:2
3.1 lnc-FAM150B-2:2
4.0 lnc-FAM150B-2:2
4.1 lnc-FAM150B-2:2
5.0 lnc-FAM150B-2:2
5.1 lnc-RAD51AP2-229:32
5.2 lnc-ALKAL2-2:32