Transcript: lnc-ALG2-6:40

Basic information

LNCipedia transcript ID: lnc-ALG2-6:40 
LNCipedia gene ID: lnc-ALG2-6
Ensembl Gene ID: ENSG00000271086
Ensembl Transcript ID: ENST00000603491
Location (hg38): chr9:99355337-99356264
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 928 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000603491.1
Alternative gene names: ENSG00000271086.1; NAMA; ENSG00000271086.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.1127 non-coding 
CPAT coding probability 78.17% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ALG2-6:40 no no no no

Available literature

  1. Zheng (2016), BRAF-Activated Long Noncoding RNA Modulates Papillary Thyroid Carcinoma Cell Proliferation through Regulating Thyroid Stimulating Hormone Receptor., Cancer Res Treat
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALG2-6:40
4.0 lnc-ALG2-6:40
4.1 lnc-ALG2-6:40
5.0 lnc-ALG2-6:40
5.1 lnc-ERP44-11:40
5.2 lnc-ALG2-6:40