Transcript: lnc-ALG1L-2:2

Basic information

LNCipedia transcript ID: lnc-ALG1L-2:2 
LNCipedia gene ID: lnc-ALG1L-2
Ensembl Gene ID: ENSG00000241288
Ensembl Transcript ID: ENST00000597749
Location (hg38): chr3:125886836-125889075
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 723 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000597749.2
Alternative gene names: ENSG00000241288.3; RP11-379B18.5; ENSG00000241288.7; AC092902.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.3695 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALG1L-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALG1L-2:2
4.0 lnc-ALG1L-2:2
4.1 lnc-ALG1L-2:2
5.0 lnc-ALG1L-2:2
5.1 lnc-SLC41A3-5:16
5.2 lnc-ALG1L-2:2