Transcript: lnc-ALG14-1:2

Basic information

LNCipedia transcript ID: lnc-ALG14-1:2 
LNCipedia gene ID: lnc-ALG14-1
Ensembl Gene ID: ENSG00000226026
Ensembl Transcript ID: ENST00000419846
Location (hg38): chr1:95174124-95233979
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 522 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419846.1; RP11-57H12.3-002; OTTHUMT00000029941.1; NONHSAT004649
Alternative gene names: ENSG00000226026.1; RP11-57H12.3; OTTHUMG00000010849.1; ENSG00000226026.5; AC092802.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.9458 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALG14-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALG14-1:2
4.0 lnc-ALG14-1:2
4.1 lnc-ALG14-1:2
5.0 lnc-ALG14-1:2
5.1 lnc-CNN3-10:7
5.2 lnc-ALG14-1:2