Transcript: lnc-ALDH1B1-9:4

Basic information

LNCipedia transcript ID: lnc-ALDH1B1-9:4 
LNCipedia gene ID: lnc-ALDH1B1-9
Location (hg38): chr9:38848562-38851916
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 792 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00015824; ENST00000441326; ENST00000441326.1; RP11-38P6.1-001; OTTHUMT00000128842.1; NONHSAT131590
Alternative gene names: XLOC_007709; linc-FAM75A7-15; ENSG00000223408; RP11-38P6.1; ENSG00000223408.1; OTTHUMG00000058148.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.1269 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALDH1B1-9:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM27B-1:2
3.1 lnc-FAM27B-1:2
4.0 lnc-FAM27B-1:2
4.1 lnc-FAM27B-1:2
5.0 lnc-FAM27B-1:2
5.1 lnc-DCAF10-15:4
5.2 lnc-ALDH1B1-9:4