Transcript: lnc-ALDH1B1-9:1

Basic information

LNCipedia transcript ID: lnc-ALDH1B1-9:1 
LNCipedia gene ID: lnc-ALDH1B1-9
Ensembl Gene ID: ENSG00000228467
Ensembl Transcript ID: ENST00000444791
Location (hg38): chr9:38804007-38851916
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 891 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015600; NONHSAT131589; ENST00000444791.2
Alternative gene names: XLOC_007709; linc-FAM75A7-15; ENSG00000228467.2; RP11-402N8.1; AL845311.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.1269 non-coding 
CPAT coding probability 2.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALDH1B1-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM27B-1:1
3.1 lnc-FAM27B-1:1
4.0 lnc-FAM27B-1:1
4.1 lnc-FAM27B-1:1
5.0 lnc-FAM27B-1:1
5.1 lnc-DCAF10-15:1
5.2 lnc-ALDH1B1-9:1