Transcript: lnc-AKTIP-2:1

Basic information

LNCipedia transcript ID: lnc-AKTIP-2:1 
LNCipedia gene ID: lnc-AKTIP-2
RefSeq ID: NR_136518
Location (hg38): chr16:53035690-53052873
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 464 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000562178.1; RP11-467J12.4-001; OTTHUMT00000422336.1; NONHSAT142557; NR_136518.1
Alternative gene names: ENSG00000261550.1; RP11-467J12.4; OTTHUMG00000173186.1; LOC105371267


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.4595 non-coding 
CPAT coding probability 4.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AKTIP-2:1 no no no no

Available literature

  1. Sánchez (2014), Genome-wide analysis of the human p53 transcriptional network unveils a lncRNA tumour suppressor signature., Nat Commun


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AKTIP-2:1
4.0 lnc-AKTIP-2:1
4.1 lnc-AKTIP-2:1
5.0 lnc-AKTIP-2:1
5.1 lnc-CFAP20-109:1
5.2 lnc-AKTIP-2:1