Transcript: lnc-AKTIP-1:5

Basic information

LNCipedia transcript ID: lnc-AKTIP-1:5 
LNCipedia gene ID: lnc-AKTIP-1
Location (hg38): chr16:53491040-53493968
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2929 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000571523.1; RP11-44F14.11-001; OTTHUMT00000439890.1; NONHSAT142584
Alternative gene names: ENSG00000262557.1; RP11-44F14.11; OTTHUMG00000177947.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.6373 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AKTIP-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPGRIP1L-1:1
4.0 lnc-RPGRIP1L-1:1
4.1 lnc-RPGRIP1L-1:1
5.0 lnc-RPGRIP1L-1:1
5.1 lnc-CFAP20-99:1
5.2 lnc-AKTIP-1:5