Transcript: lnc-AKR1E2-5:6

Basic information

LNCipedia transcript ID: lnc-AKR1E2-5:6 
LNCipedia gene ID: lnc-AKR1E2-5
Ensembl Gene ID: ENSG00000236990
Ensembl Transcript ID: ENST00000455199
RefSeq ID: NR_120632
Location (hg38): chr10:4051726-4089013
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2287 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017698; ENST00000455199; ENST00000455199.1; RP11-433J20.1-001; OTTHUMT00000046505.1; NONHSAT011078; NR_120632; NR_120632.1
Alternative gene names: XLOC_008358; linc-AKR1E2-5; ENSG00000236990; RP11-433J20.1; ENSG00000236990.1; OTTHUMG00000017571.1; AC025822.2; LOC101927964


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.7398 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AKR1E2-5:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AKR1E2-5:6
3.1 lnc-AKR1E2-5:6
4.0 lnc-AKR1E2-5:6
4.1 lnc-AKR1E2-5:6
5.0 lnc-AKR1E2-5:6
5.1 lnc-NPY4R2-500:14
5.2 lnc-AKR1E2-5:6