Transcript: lnc-AKR1C1-2:3

Basic information

LNCipedia transcript ID: lnc-AKR1C1-2:3 
LNCipedia gene ID: lnc-AKR1C1-2
Ensembl Gene ID: ENSG00000224251
Ensembl Transcript ID: ENST00000451575
Location (hg38): chr10:4995488-4997374
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 425 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT011125; ENST00000451575.2; ENST00000451575.6
Alternative gene names: ENSG00000224251.2; RP11-499O7.7; ENSG00000224251.6; AL391427.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.2534 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AKR1C1-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AKR1C1-2:3
4.0 lnc-AKR1C1-2:3
4.1 lnc-AKR1C1-2:3
5.0 lnc-AKR1C1-2:3
5.1 lnc-NPY4R2-484:1
5.2 lnc-AKR1C1-2:3