Transcript: lnc-AHSP-5:3

Basic information

LNCipedia transcript ID: lnc-AHSP-5:3 
LNCipedia gene ID: lnc-AHSP-5
Ensembl Gene ID: ENSG00000260625
Ensembl Transcript ID: ENST00000569782
Location (hg38): chr16:31508471-31509256
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 655 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569782.2
Alternative gene names: ENSG00000260625.2; RP11-452L6.7; AC026471.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -483.2277 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AHSP-5:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SLC5A2-1:5
4.1 lnc-AHSP-5:3
5.0 lnc-AHSP-5:3
5.1 lnc-ZNF646-46:3
5.2 lnc-AHSP-5:3