Transcript: lnc-AGRP-1:19

Basic information

LNCipedia transcript ID: lnc-AGRP-1:19 
LNCipedia gene ID: lnc-AGRP-1
Ensembl Gene ID: ENSG00000259945
Ensembl Transcript ID: ENST00000563083
Location (hg38): chr16:67542123-67542963
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 336 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563083.1; CTD-2012K14.3-001; OTTHUMT00000420960.1; NONHSAT143139
Alternative gene names: ENSG00000259945.1; CTD-2012K14.3; OTTHUMG00000172864.1; AC027682.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -219.9348 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGRP-1:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGRP-3:1
4.0 lnc-AGRP-3:1
4.1 lnc-AGRP-1:19
5.0 lnc-AGRP-1:19
5.1 lnc-PSMB10-10:13
5.2 lnc-AGRP-1:19