Transcript: lnc-AGPAT5-1:1

Basic information

LNCipedia transcript ID: lnc-AGPAT5-1:1 
LNCipedia gene ID: lnc-AGPAT5-1
Ensembl Gene ID: ENSG00000245857
Ensembl Transcript ID: ENST00000500823
Location (hg38): chr8:6835554-6842457
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1110 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500823; ENST00000500823.2; GS1-24F4.2-001; OTTHUMT00000382708.1
Alternative gene names: ENSG00000245857; GS1-24F4.2; ENSG00000245857.2; OTTHUMG00000165210.1; AF233439.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.9615 non-coding 
CPAT coding probability 9.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGPAT5-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AGPAT5-1:1
3.1 lnc-AGPAT5-1:1
4.0 lnc-AGPAT5-1:1
4.1 lnc-AGPAT5-1:1
5.0 lnc-AGPAT5-1:1
5.1 lnc-DEFB106A-19:3
5.2 lnc-AGPAT5-1:1