Transcript: lnc-AGPAT2-2:8

Basic information

LNCipedia transcript ID: lnc-AGPAT2-2:8 
LNCipedia gene ID: lnc-AGPAT2-2
Location (hg38): chr9:136611447-136624001
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1163 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000110133.1|ENCT00000462212.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1.1972 non-coding 
CPAT coding probability 11.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGPAT2-2:8 no no no no

Available literature

  1. Hang (2015), Notch 1 promotes cisplatin-resistant gastric cancer formation by upregulating lncRNA AK022798 expression., Anticancer Drugs


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AGPAT2-2:8
5.0 lnc-AGPAT2-2:8
5.1 lnc-SEC16A-3:2
5.2 lnc-AGPAT2-2:8