Transcript: lnc-AGPAT2-2:2

Basic information

LNCipedia transcript ID: lnc-AGPAT2-2:2 
LNCipedia gene ID: lnc-AGPAT2-2
Location (hg38): chr9:136612034-136615843
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 379 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016903; NONHSAT135559
Alternative gene names: XLOC_007896; linc-NOTCH1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.1972 non-coding 
CPAT coding probability 22.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGPAT2-2:2 no no no no

Available literature

  1. Hang (2015), Notch 1 promotes cisplatin-resistant gastric cancer formation by upregulating lncRNA AK022798 expression., Anticancer Drugs


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AGPAT2-1:2
3.1 lnc-AGPAT2-2:2
4.0 lnc-AGPAT2-2:2
4.1 lnc-AGPAT2-2:2
5.0 lnc-AGPAT2-2:2
5.1 lnc-SEC16A-3:5
5.2 lnc-AGPAT2-2:2