Transcript: lnc-AGPAT2-1:2

Basic information

LNCipedia transcript ID: lnc-AGPAT2-1:2 
LNCipedia gene ID: lnc-AGPAT2-1
Location (hg38): chr9:136648722-136660421
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 441 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000597530.1
Alternative gene names: ENSG00000228401.3; RP11-251M1.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -319.66 non-coding 
CPAT coding probability 19.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGPAT2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGPAT2-1:2
4.0 lnc-AGPAT2-1:2
4.1 lnc-AGPAT2-1:2
5.0 lnc-AGPAT2-1:2
5.1 lnc-SEC16A-4:2
5.2 lnc-AGPAT2-1:2