Transcript: lnc-AGPAT2-1:1

Basic information

LNCipedia transcript ID: lnc-AGPAT2-1:1 
LNCipedia gene ID: lnc-AGPAT2-1
Ensembl Gene ID: ENSG00000228401
Ensembl Transcript ID: ENST00000411904
RefSeq ID: NR_135132
Location (hg38): chr9:136648610-136660421
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 557 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000411904.1; RP11-251M1.1-001; OTTHUMT00000055093.1; NONHSAT135564; NR_135132.1
Alternative gene names: ENSG00000228401.2; RP11-251M1.1; OTTHUMG00000020937.1; ENSG00000228401.3; ENSG00000228401.4; HSPC324; AL590226.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.2557 non-coding 
CPAT coding probability 3.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGPAT2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGPAT2-1:1
4.0 lnc-AGPAT2-1:1
4.1 lnc-AGPAT2-1:1
5.0 lnc-AGPAT2-1:1
5.1 lnc-SEC16A-4:1
5.2 lnc-AGPAT2-1:1