Transcript: lnc-AGMAT-1:3

Basic information

LNCipedia transcript ID: lnc-AGMAT-1:3 
LNCipedia gene ID: lnc-AGMAT-1
Location (hg38): chr1:15586136-15603612
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2831 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237301.1|ENST00000428945.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.6879 non-coding 
CPAT coding probability 19.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGMAT-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AGMAT-1:3
5.0 lnc-AGMAT-1:3
5.1 lnc-LRRC38-18:2
5.2 lnc-AGMAT-1:3