Transcript: lnc-AGBL4-2:1

Basic information

LNCipedia transcript ID: lnc-AGBL4-2:1 
LNCipedia gene ID: lnc-AGBL4-2
Ensembl Gene ID: ENSG00000233407
Ensembl Transcript ID: ENST00000440897
Location (hg38): chr1:50206084-50223127
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 250 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000520; ENST00000440897.1; RP11-567C20.3-001; OTTHUMT00000021721.1; NONHSAT003155
Alternative gene names: XLOC_000829; linc-AGBL4-4; ENSG00000233407.1; RP11-567C20.3; OTTHUMG00000007882.1; AL592182.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -254.7409 non-coding 
CPAT coding probability 0.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGBL4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AGBL4-1:1
3.1 lnc-AGBL4-2:1
4.0 lnc-AGBL4-2:1
4.1 lnc-AGBL4-2:1
5.0 lnc-AGBL4-2:1
5.1 lnc-DMRTA2-13:1
5.2 lnc-AGBL4-2:1