Transcript: lnc-AGAP5-1:6

Basic information

LNCipedia transcript ID: lnc-AGAP5-1:6 
LNCipedia gene ID: lnc-AGAP5-1
Location (hg38): chr10:73673122-73675934
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 508 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000435317.2; RP11-464F9.9-001; OTTHUMT00000048688.1; NONHSAT013997
Alternative gene names: ENSG00000251582.1; RP11-464F9.9; OTTHUMG00000018482.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.4593 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGAP5-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGAP5-1:6
4.0 lnc-AGAP5-1:6
4.1 lnc-AGAP5-1:6
5.0 lnc-AGAP5-1:6
5.1 lnc-VSIR-31:31
5.2 lnc-AGAP5-1:6