Transcript: lnc-AGAP2-1:2

Basic information

LNCipedia transcript ID: lnc-AGAP2-1:2 
LNCipedia gene ID: lnc-AGAP2-1
Location (hg38): chr12:57723761-57725665
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1795 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT028957; ENST00000548410.2
Alternative gene names: ENSG00000257499.2; RP11-571M6.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.4456 non-coding 
CPAT coding probability 2.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGAP2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGAP2-1:2
4.0 lnc-AGAP2-1:2
4.1 lnc-AGAP2-1:2
5.0 lnc-AGAP2-1:2
5.1 lnc-PMEL-68:3
5.2 lnc-AGAP2-1:2