Transcript: lnc-ADTRP-2:3

Basic information

LNCipedia transcript ID: lnc-ADTRP-2:3 
LNCipedia gene ID: lnc-ADTRP-2
Ensembl Gene ID: ENSG00000225102
Ensembl Transcript ID: ENST00000456036
Location (hg38): chr6:11990343-11992012
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 276 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456036.1; RP11-456H18.1-001; OTTHUMT00000039868.1
Alternative gene names: ENSG00000225102.1; RP11-456H18.1; OTTHUMG00000014263.1; AL157373.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -271.9351 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADTRP-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C6orf105-2:1
4.0 lnc-C6orf105-2:1
4.1 lnc-C6orf105-2:1
5.0 lnc-C6orf105-2:1
5.1 lnc-ECI2-251:3
5.2 lnc-ADTRP-2:3