Transcript: lnc-ADAM10-1:2

Basic information

LNCipedia transcript ID: lnc-ADAM10-1:2 
LNCipedia gene ID: lnc-ADAM10-1
Ensembl Gene ID: ENSG00000245975
Ensembl Transcript ID: ENST00000500929
RefSeq ID: NR_135474
Location (hg38): chr15:58768072-58770974
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1396 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500929.2; RP11-30K9.6-001; OTTHUMT00000416227.1; NONHSAT044128; NR_135474.1
Alternative gene names: ENSG00000245975.2; RP11-30K9.6; OTTHUMG00000171982.1; AC090515.2; LOC101928725


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.4377 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAM10-1:2 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADAM10-1:2
4.0 lnc-ADAM10-1:2
4.1 lnc-ADAM10-1:2
5.0 lnc-ADAM10-1:2
5.1 lnc-ICE2-40:3
5.2 lnc-ADAM10-1:2